J3_5K0Y_015
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAGAUCAAAACCAACC*GCUUUG*CUAG
- Length
- 26 nucleotides
- Bulged bases
- 5K0Y|1|A|A|223, 5K0Y|1|A|U|224, 5K0Y|1|A|C|225, 5K0Y|1|A|C|275, 5K0Y|1|A|U|276, 5K0Y|1|A|U|277, 5K0Y|1|A|U|278
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5K0Y|1|A|C|220
5K0Y|1|A|A|221
5K0Y|1|A|G|222
5K0Y|1|A|A|223
5K0Y|1|A|U|224
5K0Y|1|A|C|225
5K0Y|1|A|A|226
5K0Y|1|A|A|227
5K0Y|1|A|A|228
5K0Y|1|A|A|229
5K0Y|1|A|C|230
5K0Y|1|A|C|231
5K0Y|1|A|A|232
5K0Y|1|A|A|233
5K0Y|1|A|C|234
5K0Y|1|A|C|235
*
5K0Y|1|A|G|274
5K0Y|1|A|C|275
5K0Y|1|A|U|276
5K0Y|1|A|U|277
5K0Y|1|A|U|278
5K0Y|1|A|G|279
*
5K0Y|1|A|C|286
5K0Y|1|A|U|287
5K0Y|1|A|A|288
5K0Y|1|A|G|289
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain I
- 40S ribosomal protein S4
- Chain o
- 40S ribosomal protein S8
- Chain q
- 40S ribosomal protein S6
Coloring options: