J3_5KCR_014
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5KCR|1|1B|U|14, 5KCR|1|1B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCR_014 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.0421
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5KCR|1|1B|G|10
5KCR|1|1B|C|11
5KCR|1|1B|C|12
5KCR|1|1B|G|13
5KCR|1|1B|U|14
5KCR|1|1B|A|15
5KCR|1|1B|G|16
*
5KCR|1|1B|C|68
5KCR|1|1B|G|69
5KCR|1|1B|C|70
*
5KCR|1|1B|G|106
5KCR|1|1B|G|107
5KCR|1|1B|A|108
5KCR|1|1B|A|109
5KCR|1|1B|C|110
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1S
- 50S ribosomal protein L18
- Chain 1Z
- 50S ribosomal protein L25
Coloring options: