J3_5KCR_027

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5KCR|1|1A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0342

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KCR|1|1A|G|297
5KCR|1|1A|G|298
5KCR|1|1A|A|299
5KCR|1|1A|A|300
5KCR|1|1A|G|301
*
5KCR|1|1A|C|316
5KCR|1|1A|G|317
5KCR|1|1A|C|318
5KCR|1|1A|G|319
5KCR|1|1A|A|320
5KCR|1|1A|U|321
5KCR|1|1A|A|322
5KCR|1|1A|C|323
5KCR|1|1A|A|324
5KCR|1|1A|G|325
*
5KCR|1|1A|C|337
5KCR|1|1A|G|338
5KCR|1|1A|U|339
5KCR|1|1A|A|340
5KCR|1|1A|C|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24