J3_5KCR_031

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GGAAUAUUG*CAGC

Length

15 nucleotides

Bulged bases

5KCR|1|1a|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCR|1|1a|G|46
5KCR|1|1a|C|47
*
5KCR|1|1a|G|361
5KCR|1|1a|G|362
5KCR|1|1a|A|363
5KCR|1|1a|A|364
5KCR|1|1a|U|365
5KCR|1|1a|A|366
5KCR|1|1a|U|367
5KCR|1|1a|U|368
5KCR|1|1a|G|369
*
5KCR|1|1a|C|392
5KCR|1|1a|A|393
5KCR|1|1a|G|394
5KCR|1|1a|C|395

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12

Chain 1p

30S ribosomal protein S16