J3_5KCS_006

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5KCS|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCS_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1434

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5KCS|1|1A|C|1306
5KCS|1|1A|A|1307
5KCS|1|1A|A|1308
5KCS|1|1A|G|1309
*
5KCS|1|1A|C|1605
5KCS|1|1A|C|1606
5KCS|1|1A|C|1607
5KCS|1|1A|A|1608
5KCS|1|1A|A|1609
5KCS|1|1A|A|1610
5KCS|1|1A|C|1611
*
5KCS|1|1A|G|1620
5KCS|1|1A|U|1621
5KCS|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34