J3_5KCS_012
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5KCS|1|1A|U|2833, 5KCS|1|1A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCS_012 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1962
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5KCS|1|1A|G|2812
5KCS|1|1A|A|2813
5KCS|1|1A|A|2814
5KCS|1|1A|C|2815
*
5KCS|1|1A|G|2831
5KCS|1|1A|U|2832
5KCS|1|1A|U|2833
5KCS|1|1A|G|2834
5KCS|1|1A|A|2835
5KCS|1|1A|U|2836
*
5KCS|1|1A|A|2882
5KCS|1|1A|A|2883
5KCS|1|1A|U|2884
5KCS|1|1A|G|2885
5KCS|1|1A|A|2886
5KCS|1|1A|A|2887
5KCS|1|1A|C|2888
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
Coloring options: