J3_5KCS_020
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCS_020 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1702
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5KCS|1|1a|C|990
5KCS|1|1a|U|991
5KCS|1|1a|U|992
5KCS|1|1a|G|993
*
5KCS|1|1a|C|1045
5KCS|1|1a|A|1046
5KCS|1|1a|G|1047
*
5KCS|1|1a|C|1210
5KCS|1|1a|U|1211
5KCS|1|1a|U|1212
5KCS|1|1a|A|1213
5KCS|1|1a|C|1214
5KCS|1|1a|G|1215
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1n
- 30S ribosomal protein S14
- Chain 1w
- Tetracycline resistance protein TetM from transposon Tn916
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