J3_5KCS_022
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCS_022 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.153
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5KCS|1|1a|U|1073
5KCS|1|1a|G|1074
*
5KCS|1|1a|U|1083
5KCS|1|1a|G|1084
5KCS|1|1a|U|1085
5KCS|1|1a|U|1086
5KCS|1|1a|G|1087
*
5KCS|1|1a|C|1098
5KCS|1|1a|G|1099
5KCS|1|1a|C|1100
5KCS|1|1a|A|1101
5KCS|1|1a|A|1102
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1e
- 30S ribosomal protein S5
- Chain 1u
- 30S ribosomal protein S21
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