J3_5KCS_025
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5KCS|1|1A|A|504, 5KCS|1|1A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCS_025 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.1177
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5KCS|1|1A|G|30
5KCS|1|1A|C|31
*
5KCS|1|1A|G|474
5KCS|1|1A|C|475
5KCS|1|1A|G|476
5KCS|1|1A|A|477
5KCS|1|1A|A|478
5KCS|1|1A|A|479
5KCS|1|1A|A|480
5KCS|1|1A|G|481
5KCS|1|1A|A|482
5KCS|1|1A|A|483
5KCS|1|1A|C|484
*
5KCS|1|1A|G|496
5KCS|1|1A|A|497
5KCS|1|1A|G|498
5KCS|1|1A|U|499
5KCS|1|1A|G|500
5KCS|1|1A|A|501
5KCS|1|1A|A|502
5KCS|1|1A|A|503
5KCS|1|1A|A|504
5KCS|1|1A|A|505
5KCS|1|1A|G|506
5KCS|1|1A|A|507
5KCS|1|1A|A|508
5KCS|1|1A|C|509
5KCS|1|1A|C|510
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: