J3_5KCS_026

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5KCS|1|1A|U|34, 5KCS|1|1A|U|448, 5KCS|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCS_026 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1522

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5KCS|1|1A|C|32
5KCS|1|1A|C|33
5KCS|1|1A|U|34
5KCS|1|1A|G|35
*
5KCS|1|1A|C|445
5KCS|1|1A|G|446
5KCS|1|1A|A|447
5KCS|1|1A|U|448
5KCS|1|1A|A|449
5KCS|1|1A|G|450
5KCS|1|1A|U|451
5KCS|1|1A|G|452
5KCS|1|1A|A|453
5KCS|1|1A|A|454
5KCS|1|1A|C|455
5KCS|1|1A|C|456
5KCS|1|1A|A|457
5KCS|1|1A|G|458
5KCS|1|1A|U|459
5KCS|1|1A|A|460
5KCS|1|1A|C|461
*
5KCS|1|1A|G|468
5KCS|1|1A|G|469
5KCS|1|1A|A|470
5KCS|1|1A|A|471
5KCS|1|1A|A|472
5KCS|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23