J3_5KPS_005

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1045

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5KPS|1|27|C|936
5KPS|1|27|A|937
5KPS|1|27|A|938
5KPS|1|27|G|939
*
5KPS|1|27|C|1344
5KPS|1|27|U|1345
5KPS|1|27|A|1346
5KPS|1|27|G|1347
5KPS|1|27|U|1348
5KPS|1|27|A|1349
5KPS|1|27|A|1350
*
5KPS|1|27|U|1372
5KPS|1|27|G|1373
5KPS|1|27|A|1374
5KPS|1|27|A|1375
5KPS|1|27|U|1376
5KPS|1|27|A|1377
5KPS|1|27|C|1378
5KPS|1|27|G|1379

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S7

Chain 14

30S ribosomal protein S9

Chain 32

Transfer RNA; tRNA