J3_5KPS_021

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_021 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0972

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5KPS|1|28|U|1344
5KPS|1|28|C|1345
5KPS|1|28|G|1346
5KPS|1|28|A|1347
5KPS|1|28|C|1348
5KPS|1|28|C|1349
*
5KPS|1|28|G|1382
5KPS|1|28|A|1383
5KPS|1|28|A|1384
5KPS|1|28|A|1385
*
5KPS|1|28|U|1402
5KPS|1|28|A|1403

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23