J3_5KPS_023

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

5KPS|1|28|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPS|1|28|C|2295
5KPS|1|28|U|2296
5KPS|1|28|A|2297
5KPS|1|28|A|2298
5KPS|1|28|U|2299
*
5KPS|1|28|A|2317
5KPS|1|28|G|2318
5KPS|1|28|G|2319
5KPS|1|28|U|2320
5KPS|1|28|U|2321
5KPS|1|28|A|2322
5KPS|1|28|G|2323
*
5KPS|1|28|C|2332
5KPS|1|28|A|2333
5KPS|1|28|U|2334
5KPS|1|28|A|2335
5KPS|1|28|A|2336
5KPS|1|28|G|2337

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 29

5S ribosomal RNA; 5S rRNA

Chain 31

Transfer RNA; tRNA

Chain E

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27