J3_5KPS_030

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5KPS|1|27|U|1212, 5KPS|1|27|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1339

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5KPS|1|27|C|990
5KPS|1|27|U|991
5KPS|1|27|U|992
5KPS|1|27|G|993
5KPS|1|27|A|994
5KPS|1|27|C|995
5KPS|1|27|A|996
5KPS|1|27|U|997
*
5KPS|1|27|A|1044
5KPS|1|27|C|1045
5KPS|1|27|A|1046
5KPS|1|27|G|1047
*
5KPS|1|27|C|1210
5KPS|1|27|U|1211
5KPS|1|27|U|1212
5KPS|1|27|A|1213
5KPS|1|27|C|1214
5KPS|1|27|G|1215

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 19

30S ribosomal protein S14