J3_5KPS_036

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5KPS|1|28|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_036 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1407

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPS|1|28|G|297
5KPS|1|28|G|298
5KPS|1|28|A|299
5KPS|1|28|A|300
5KPS|1|28|G|301
*
5KPS|1|28|C|316
5KPS|1|28|G|317
5KPS|1|28|C|318
5KPS|1|28|G|319
5KPS|1|28|A|320
5KPS|1|28|U|321
5KPS|1|28|A|322
5KPS|1|28|C|323
5KPS|1|28|A|324
5KPS|1|28|G|325
*
5KPS|1|28|C|337
5KPS|1|28|G|338
5KPS|1|28|U|339
5KPS|1|28|A|340
5KPS|1|28|C|341

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24