J3_5KPV_005

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPV_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1373

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5KPV|1|26|C|936
5KPV|1|26|A|937
5KPV|1|26|A|938
5KPV|1|26|G|939
*
5KPV|1|26|C|1344
5KPV|1|26|U|1345
5KPV|1|26|A|1346
5KPV|1|26|G|1347
5KPV|1|26|U|1348
5KPV|1|26|A|1349
5KPV|1|26|A|1350
*
5KPV|1|26|U|1372
5KPV|1|26|G|1373
5KPV|1|26|A|1374
5KPV|1|26|A|1375
5KPV|1|26|U|1376
5KPV|1|26|A|1377
5KPV|1|26|C|1378
5KPV|1|26|G|1379

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S7

Chain 13

30S ribosomal protein S9

Chain 32

Transfer RNA; tRNA