J3_5KPV_007
3D structure
- PDB id
- 5KPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5KPV|1|26|A|975, 5KPV|1|26|G|976, 5KPV|1|26|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KPV_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1125
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5KPV|1|26|U|955
5KPV|1|26|U|956
5KPV|1|26|U|957
5KPV|1|26|A|958
5KPV|1|26|A|959
5KPV|1|26|U|960
5KPV|1|26|U|961
5KPV|1|26|C|962
*
5KPV|1|26|G|973
5KPV|1|26|A|974
5KPV|1|26|A|975
5KPV|1|26|G|976
5KPV|1|26|A|977
5KPV|1|26|A|978
5KPV|1|26|C|979
5KPV|1|26|C|980
5KPV|1|26|U|981
5KPV|1|26|U|982
5KPV|1|26|A|983
5KPV|1|26|C|984
*
5KPV|1|26|G|1221
5KPV|1|26|G|1222
5KPV|1|26|C|1223
5KPV|1|26|U|1224
5KPV|1|26|A|1225
Current chains
- Chain 26
- 16S ribosomal RNA
Nearby chains
- Chain 14
- 30S ribosomal protein S10
- Chain 17
- 30S ribosomal protein S13
- Chain 18
- 30S ribosomal protein S14
- Chain 23
- 30S ribosomal protein S19
- Chain 33
- GTP pyrophosphokinase
Coloring options: