J3_5KPV_033

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5KPV|1|27|A|504, 5KPV|1|27|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPV_033 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1391

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5KPV|1|27|G|30
5KPV|1|27|C|31
*
5KPV|1|27|G|474
5KPV|1|27|C|475
5KPV|1|27|G|476
5KPV|1|27|A|477
5KPV|1|27|A|478
5KPV|1|27|A|479
5KPV|1|27|A|480
5KPV|1|27|G|481
5KPV|1|27|A|482
5KPV|1|27|A|483
5KPV|1|27|C|484
*
5KPV|1|27|G|496
5KPV|1|27|A|497
5KPV|1|27|G|498
5KPV|1|27|U|499
5KPV|1|27|G|500
5KPV|1|27|A|501
5KPV|1|27|A|502
5KPV|1|27|A|503
5KPV|1|27|A|504
5KPV|1|27|A|505
5KPV|1|27|G|506
5KPV|1|27|A|507
5KPV|1|27|A|508
5KPV|1|27|C|509
5KPV|1|27|C|510

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24