J3_5KPW_025
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5KPW|1|27|U|2833, 5KPW|1|27|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KPW_025 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1409
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5KPW|1|27|G|2812
5KPW|1|27|A|2813
5KPW|1|27|A|2814
5KPW|1|27|C|2815
*
5KPW|1|27|G|2831
5KPW|1|27|U|2832
5KPW|1|27|U|2833
5KPW|1|27|G|2834
5KPW|1|27|A|2835
5KPW|1|27|U|2836
*
5KPW|1|27|A|2882
5KPW|1|27|A|2883
5KPW|1|27|U|2884
5KPW|1|27|G|2885
5KPW|1|27|A|2886
5KPW|1|27|A|2887
5KPW|1|27|C|2888
Current chains
- Chain 27
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L32
- Chain B
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L17
- Chain R
- 50S ribosomal protein L22
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