J3_5KPW_031

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5KPW|1|27|A|504, 5KPW|1|27|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_031 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1017

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5KPW|1|27|G|30
5KPW|1|27|C|31
*
5KPW|1|27|G|474
5KPW|1|27|C|475
5KPW|1|27|G|476
5KPW|1|27|A|477
5KPW|1|27|A|478
5KPW|1|27|A|479
5KPW|1|27|A|480
5KPW|1|27|G|481
5KPW|1|27|A|482
5KPW|1|27|A|483
5KPW|1|27|C|484
*
5KPW|1|27|G|496
5KPW|1|27|A|497
5KPW|1|27|G|498
5KPW|1|27|U|499
5KPW|1|27|G|500
5KPW|1|27|A|501
5KPW|1|27|A|502
5KPW|1|27|A|503
5KPW|1|27|A|504
5KPW|1|27|A|505
5KPW|1|27|G|506
5KPW|1|27|A|507
5KPW|1|27|A|508
5KPW|1|27|C|509
5KPW|1|27|C|510

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24