J3_5KPX_005

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPX_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1184

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5KPX|1|26|C|936
5KPX|1|26|A|937
5KPX|1|26|A|938
5KPX|1|26|G|939
*
5KPX|1|26|C|1344
5KPX|1|26|U|1345
5KPX|1|26|A|1346
5KPX|1|26|G|1347
5KPX|1|26|U|1348
5KPX|1|26|A|1349
5KPX|1|26|A|1350
*
5KPX|1|26|U|1372
5KPX|1|26|G|1373
5KPX|1|26|A|1374
5KPX|1|26|A|1375
5KPX|1|26|U|1376
5KPX|1|26|A|1377
5KPX|1|26|C|1378
5KPX|1|26|G|1379

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S7

Chain 13

30S ribosomal protein S9

Chain 32

Transfer RNA; tRNA