J3_5KPX_012

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5KPX|1|26|U|1240, 5KPX|1|26|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPX_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1773

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

5KPX|1|26|C|1237
5KPX|1|26|A|1238
5KPX|1|26|A|1239
5KPX|1|26|U|1240
5KPX|1|26|G|1241
*
5KPX|1|26|C|1296
5KPX|1|26|G|1297
5KPX|1|26|U|1298
5KPX|1|26|A|1299
5KPX|1|26|G|1300
5KPX|1|26|U|1301
5KPX|1|26|C|1302
5KPX|1|26|C|1303
*
5KPX|1|26|G|1334
5KPX|1|26|U|1335
5KPX|1|26|C|1336
5KPX|1|26|G|1337

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S7

Chain 17

30S ribosomal protein S13