J3_5KPX_027

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5KPX|1|26|C|48, 5KPX|1|26|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPX_027 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.123

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5KPX|1|26|G|46
5KPX|1|26|C|47
5KPX|1|26|C|48
5KPX|1|26|U|49
5KPX|1|26|A|50
5KPX|1|26|A|51
5KPX|1|26|C|52
*
5KPX|1|26|G|359
5KPX|1|26|G|360
5KPX|1|26|G|361
5KPX|1|26|G|362
5KPX|1|26|A|363
5KPX|1|26|A|364
5KPX|1|26|U|365
5KPX|1|26|A|366
5KPX|1|26|U|367
*
5KPX|1|26|A|393
5KPX|1|26|G|394
5KPX|1|26|C|395

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 20

30S ribosomal protein S16

Chain 33

GTP pyrophosphokinase