J3_5KPX_033
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5KPX|1|27|U|34, 5KPX|1|27|U|448, 5KPX|1|27|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KPX_033 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1146
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5KPX|1|27|C|32
5KPX|1|27|C|33
5KPX|1|27|U|34
5KPX|1|27|G|35
*
5KPX|1|27|C|445
5KPX|1|27|G|446
5KPX|1|27|A|447
5KPX|1|27|U|448
5KPX|1|27|A|449
5KPX|1|27|G|450
5KPX|1|27|U|451
5KPX|1|27|G|452
5KPX|1|27|A|453
5KPX|1|27|A|454
5KPX|1|27|C|455
5KPX|1|27|C|456
5KPX|1|27|A|457
5KPX|1|27|G|458
5KPX|1|27|U|459
5KPX|1|27|A|460
5KPX|1|27|C|461
*
5KPX|1|27|G|468
5KPX|1|27|G|469
5KPX|1|27|A|470
5KPX|1|27|A|471
5KPX|1|27|A|472
5KPX|1|27|G|473
Current chains
- Chain 27
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L23
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