J3_5L3P_010

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5L3P|1|A|A|2518, 5L3P|1|A|U|2519, 5L3P|1|A|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5L3P_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1722

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5L3P|1|A|C|2517
5L3P|1|A|A|2518
5L3P|1|A|U|2519
5L3P|1|A|C|2520
*
5L3P|1|A|G|2545
5L3P|1|A|U|2546
5L3P|1|A|A|2547
*
5L3P|1|A|U|2561
5L3P|1|A|U|2562
5L3P|1|A|U|2563
5L3P|1|A|A|2564
5L3P|1|A|A|2565
5L3P|1|A|A|2566
5L3P|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain O

50S ribosomal protein L14