J3_5L3P_028

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5L3P|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5L3P_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1533

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5L3P|1|A|G|297
5L3P|1|A|G|298
5L3P|1|A|A|299
5L3P|1|A|A|300
5L3P|1|A|G|301
*
5L3P|1|A|C|316
5L3P|1|A|G|317
5L3P|1|A|C|318
5L3P|1|A|G|319
5L3P|1|A|A|320
5L3P|1|A|U|321
5L3P|1|A|A|322
5L3P|1|A|C|323
5L3P|1|A|A|324
5L3P|1|A|G|325
*
5L3P|1|A|C|337
5L3P|1|A|G|338
5L3P|1|A|U|339
5L3P|1|A|A|340
5L3P|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24