J3_5L3P_035

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUUG*CGGAG*CGUUAAGUC

Length

20 nucleotides

Bulged bases

5L3P|1|a|U|871, 5L3P|1|a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5L3P|1|a|G|824
5L3P|1|a|A|825
5L3P|1|a|C|826
5L3P|1|a|U|827
5L3P|1|a|U|828
5L3P|1|a|G|829
*
5L3P|1|a|C|857
5L3P|1|a|G|858
5L3P|1|a|G|859
5L3P|1|a|A|860
5L3P|1|a|G|861
*
5L3P|1|a|C|868
5L3P|1|a|G|869
5L3P|1|a|U|870
5L3P|1|a|U|871
5L3P|1|a|A|872
5L3P|1|a|A|873
5L3P|1|a|G|874
5L3P|1|a|U|875
5L3P|1|a|C|876

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8

Chain u

30S ribosomal protein S21