J3_5L3P_039

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5L3P|1|a|U|1212, 5L3P|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5L3P_039 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.218

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5L3P|1|a|C|990
5L3P|1|a|U|991
5L3P|1|a|U|992
5L3P|1|a|G|993
5L3P|1|a|A|994
5L3P|1|a|C|995
5L3P|1|a|A|996
5L3P|1|a|U|997
*
5L3P|1|a|A|1044
5L3P|1|a|C|1045
5L3P|1|a|A|1046
5L3P|1|a|G|1047
*
5L3P|1|a|C|1210
5L3P|1|a|U|1211
5L3P|1|a|U|1212
5L3P|1|a|A|1213
5L3P|1|a|C|1214
5L3P|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14