J3_5L3P_044
3D structure
- PDB id
- 5L3P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5L3P|1|a|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5L3P_044 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1496
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5L3P|1|a|U|1116
5L3P|1|a|A|1117
5L3P|1|a|U|1118
*
5L3P|1|a|A|1155
5L3P|1|a|G|1156
5L3P|1|a|A|1157
5L3P|1|a|C|1158
5L3P|1|a|U|1159
5L3P|1|a|G|1160
5L3P|1|a|C|1161
*
5L3P|1|a|G|1175
5L3P|1|a|A|1176
5L3P|1|a|G|1177
5L3P|1|a|G|1178
5L3P|1|a|A|1179
5L3P|1|a|A|1180
5L3P|1|a|G|1181
5L3P|1|a|G|1182
5L3P|1|a|U|1183
5L3P|1|a|G|1184
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
Coloring options: