J3_5LI0_001

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.136

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5LI0|1|A|G|30
5LI0|1|A|C|31
*
5LI0|1|A|G|520
5LI0|1|A|U|521
5LI0|1|A|G|522
5LI0|1|A|A|523
5LI0|1|A|A|524
5LI0|1|A|A|525
5LI0|1|A|A|526
5LI0|1|A|G|527
*
5LI0|1|A|C|554
5LI0|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain X

50S ribosomal protein L24