J3_5LI0_004

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5LI0|1|A|U|731, 5LI0|1|A|G|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_004 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1729

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5LI0|1|A|U|728
5LI0|1|A|G|729
5LI0|1|A|A|730
5LI0|1|A|U|731
5LI0|1|A|C|732
5LI0|1|A|U|733
5LI0|1|A|A|734
*
5LI0|1|A|U|818
5LI0|1|A|A|819
5LI0|1|A|G|820
*
5LI0|1|A|C|836
5LI0|1|A|G|837
5LI0|1|A|A|838
5LI0|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2