J3_5LI0_007

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5LI0|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1613

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5LI0|1|A|C|1342
5LI0|1|A|U|1343
5LI0|1|A|A|1344
5LI0|1|A|A|1345
5LI0|1|A|G|1346
*
5LI0|1|A|C|1649
5LI0|1|A|G|1650
5LI0|1|A|C|1651
5LI0|1|A|A|1652
5LI0|1|A|A|1653
5LI0|1|A|A|1654
5LI0|1|A|C|1655
*
5LI0|1|A|G|1664
5LI0|1|A|U|1665
5LI0|1|A|A|1666
5LI0|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34