J3_5LI0_012

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_012 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.3366

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5LI0|1|A|C|2816
5LI0|1|A|A|2817
*
5LI0|1|A|U|2826
5LI0|1|A|A|2827
5LI0|1|A|U|2828
5LI0|1|A|A|2829
5LI0|1|A|A|2830
5LI0|1|A|G|2831
*
5LI0|1|A|C|2909
5LI0|1|A|G|2910
5LI0|1|A|A|2911
5LI0|1|A|A|2912
5LI0|1|A|G|2913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3