J3_5LI0_025
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 5LI0|1|a|U|1251, 5LI0|1|a|U|1313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LI0_025 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.2178
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LI0|1|a|C|1248
5LI0|1|a|A|1249
5LI0|1|a|A|1250
5LI0|1|a|U|1251
5LI0|1|a|G|1252
*
5LI0|1|a|C|1307
5LI0|1|a|U|1308
5LI0|1|a|C|1309
5LI0|1|a|A|1310
5LI0|1|a|G|1311
5LI0|1|a|U|1312
5LI0|1|a|U|1313
5LI0|1|a|C|1314
*
5LI0|1|a|G|1345
5LI0|1|a|C|1346
5LI0|1|a|U|1347
5LI0|1|a|G|1348
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: