J3_5LI0_035

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

5LI0|1|a|C|49, 5LI0|1|a|A|51, 5LI0|1|a|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_035 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1196

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LI0|1|a|G|47
5LI0|1|a|C|48
5LI0|1|a|C|49
5LI0|1|a|U|50
5LI0|1|a|A|51
5LI0|1|a|A|52
5LI0|1|a|U|53
*
5LI0|1|a|A|367
5LI0|1|a|G|368
5LI0|1|a|G|369
5LI0|1|a|G|370
5LI0|1|a|A|371
5LI0|1|a|A|372
5LI0|1|a|U|373
5LI0|1|a|C|374
5LI0|1|a|U|375
*
5LI0|1|a|A|401
5LI0|1|a|G|402
5LI0|1|a|C|403

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16