J3_5LJ3_002
3D structure
- PDB id
- 5LJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the core of the yeast spliceosome immediately after branching
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAG*CCGUUUUACA*UGCCUUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 5LJ3|1|V|C|85, 5LJ3|1|V|U|89, 5LJ3|1|V|U|90, 5LJ3|1|V|A|91, 5LJ3|1|V|C|92, 5LJ3|1|Z|U|17, 5LJ3|1|Z|U|18, 5LJ3|1|Z|U|19, 5LJ3|1|Z|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LJ3|1|V|C|61
5LJ3|1|V|A|62
5LJ3|1|V|G|63
*
5LJ3|1|V|C|84
5LJ3|1|V|C|85
5LJ3|1|V|G|86
5LJ3|1|V|U|87
5LJ3|1|V|U|88
5LJ3|1|V|U|89
5LJ3|1|V|U|90
5LJ3|1|V|A|91
5LJ3|1|V|C|92
5LJ3|1|V|A|93
*
5LJ3|1|Z|U|12
5LJ3|1|Z|G|13
5LJ3|1|Z|C|14
5LJ3|1|Z|C|15
5LJ3|1|Z|U|16
5LJ3|1|Z|U|17
5LJ3|1|Z|U|18
5LJ3|1|Z|U|19
5LJ3|1|Z|G|20
5LJ3|1|Z|G|21
Current chains
- Chain V
- U6 snRNA (small nuclear RNA)
- Chain Z
- U2 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- Exon 1 (5' exon) of UBC4 pre-mRNA
- Chain I
- Intron of UBC4 pre-mRNA
- Chain J
- PRP46
- Chain K
- Pre-mRNA-processing protein 45
- Chain O
- CEF1
- Chain P
- CWC15
- Chain S
- CLF1
- Chain x
- unknown
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