J3_5LKS_001

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUGAAAAG*CG*CAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|379
5LKS|1|L5|U|380
5LKS|1|L5|U|381
5LKS|1|L5|G|382
5LKS|1|L5|A|383
5LKS|1|L5|A|384
5LKS|1|L5|A|385
5LKS|1|L5|A|386
5LKS|1|L5|G|387
*
5LKS|1|L5|C|414
5LKS|1|L5|G|415
*
5LKS|1|L8|C|19
5LKS|1|L8|A|20
5LKS|1|L8|C|21

Current chains

Chain L5

28S ribosomal RNA

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39