J3_5LKS_002

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCAGUCC*GGUGCG*CGACGUC

Length

22 nucleotides

Bulged bases

5LKS|1|L5|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|448
5LKS|1|L5|C|449
5LKS|1|L5|G|450
5LKS|1|L5|C|451
5LKS|1|L5|A|452
5LKS|1|L5|G|453
5LKS|1|L5|U|454
5LKS|1|L5|C|455
5LKS|1|L5|C|456
*
5LKS|1|L5|G|700
5LKS|1|L5|G|701
5LKS|1|L5|U|702
5LKS|1|L5|G|703
5LKS|1|L5|C|704
5LKS|1|L5|G|705
*
5LKS|1|L5|C|1292
5LKS|1|L5|G|1293
5LKS|1|L5|A|1294
5LKS|1|L5|C|1295
5LKS|1|L5|G|1296
5LKS|1|L5|U|1297
5LKS|1|L5|C|1298

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28