J3_5LKS_003

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCUC*GCCG*CGCGCGCGUCCCCCGAAGAGGGGGACGGCGGAGCGAGC

Length

48 nucleotides

Bulged bases

5LKS|1|L5|A|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|978
5LKS|1|L5|C|979
5LKS|1|L5|U|980
5LKS|1|L5|C|981
5LKS|1|L5|U|982
5LKS|1|L5|C|983
*
5LKS|1|L5|G|1070
5LKS|1|L5|C|1071
5LKS|1|L5|C|1072
5LKS|1|L5|G|1073
*
5LKS|1|L5|C|1239
5LKS|1|L5|G|1240
5LKS|1|L5|C|1241
5LKS|1|L5|G|1242
5LKS|1|L5|C|1243
5LKS|1|L5|G|1244
5LKS|1|L5|C|1245
5LKS|1|L5|G|1246
5LKS|1|L5|U|1247
5LKS|1|L5|C|1248
5LKS|1|L5|C|1249
5LKS|1|L5|C|1250
5LKS|1|L5|C|1251
5LKS|1|L5|C|1252
5LKS|1|L5|G|1253
5LKS|1|L5|A|1254
5LKS|1|L5|A|1255
5LKS|1|L5|G|1256
5LKS|1|L5|A|1257
5LKS|1|L5|G|1258
5LKS|1|L5|G|1259
5LKS|1|L5|G|1260
5LKS|1|L5|G|1261
5LKS|1|L5|G|1262
5LKS|1|L5|A|1263
5LKS|1|L5|C|1264
5LKS|1|L5|G|1265
5LKS|1|L5|G|1266
5LKS|1|L5|C|1267
5LKS|1|L5|G|1268
5LKS|1|L5|G|1269
5LKS|1|L5|A|1270
5LKS|1|L5|G|1271
5LKS|1|L5|C|1272
5LKS|1|L5|G|1273
5LKS|1|L5|A|1274
5LKS|1|L5|G|1275
5LKS|1|L5|C|1276

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7