J3_5LKS_005

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAGG*CCGUAGCG*CGUCCGAC

Length

21 nucleotides

Bulged bases

5LKS|1|L5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|1545
5LKS|1|L5|C|1546
5LKS|1|L5|A|1547
5LKS|1|L5|G|1548
5LKS|1|L5|G|1549
*
5LKS|1|L5|C|1579
5LKS|1|L5|C|1580
5LKS|1|L5|G|1581
5LKS|1|L5|U|1582
5LKS|1|L5|A|1583
5LKS|1|L5|G|1584
5LKS|1|L5|C|1585
5LKS|1|L5|G|1586
*
5LKS|1|L5|C|1607
5LKS|1|L5|G|1608
5LKS|1|L5|U|1609
5LKS|1|L5|C|1610
5LKS|1|L5|C|1611
5LKS|1|L5|G|1612
5LKS|1|L5|A|1613
5LKS|1|L5|C|1614

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Lp

60S ribosomal protein L37a