J3_5LKS_010

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CGGGAGUAACUAUGACUCUCUUAAGGUAG*UGAAUG

Length

38 nucleotides

Bulged bases

5LKS|1|L5|A|3760, 5LKS|1|L5|U|3773, 5LKS|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|3696
5LKS|1|L5|U|3697
5LKS|1|L5|G|3698
*
5LKS|1|L5|C|3752
5LKS|1|L5|G|3753
5LKS|1|L5|G|3754
5LKS|1|L5|G|3755
5LKS|1|L5|A|3756
5LKS|1|L5|G|3757
5LKS|1|L5|U|3758
5LKS|1|L5|A|3759
5LKS|1|L5|A|3760
5LKS|1|L5|C|3761
5LKS|1|L5|U|3762
5LKS|1|L5|A|3763
5LKS|1|L5|U|3764
5LKS|1|L5|G|3765
5LKS|1|L5|A|3766
5LKS|1|L5|C|3767
5LKS|1|L5|U|3768
5LKS|1|L5|C|3769
5LKS|1|L5|U|3770
5LKS|1|L5|C|3771
5LKS|1|L5|U|3772
5LKS|1|L5|U|3773
5LKS|1|L5|A|3774
5LKS|1|L5|A|3775
5LKS|1|L5|G|3776
5LKS|1|L5|G|3777
5LKS|1|L5|U|3778
5LKS|1|L5|A|3779
5LKS|1|L5|G|3780
*
5LKS|1|L5|U|3814
5LKS|1|L5|G|3815
5LKS|1|L5|A|3816
5LKS|1|L5|A|3817
5LKS|1|L5|U|3818
5LKS|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA