J3_5LKS_013

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAU*GCUUCUGGG*CACAAGG

Length

19 nucleotides

Bulged bases

5LKS|1|L5|C|4990, 5LKS|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|4970
5LKS|1|L5|A|4971
5LKS|1|L5|U|4972
*
5LKS|1|L5|G|4986
5LKS|1|L5|C|4987
5LKS|1|L5|U|4988
5LKS|1|L5|U|4989
5LKS|1|L5|C|4990
5LKS|1|L5|U|4991
5LKS|1|L5|G|4992
5LKS|1|L5|G|4993
5LKS|1|L5|G|4994
*
5LKS|1|L5|C|5057
5LKS|1|L5|A|5058
5LKS|1|L5|C|5059
5LKS|1|L5|A|5060
5LKS|1|L5|A|5061
5LKS|1|L5|G|5062
5LKS|1|L5|G|5063

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31