J3_5LKS_025

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUU*AAGAAGCCC*GGGCGUGGA

Length

22 nucleotides

Bulged bases

5LKS|1|L5|A|1805, 5LKS|1|L5|G|1833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|U|1725
5LKS|1|L5|U|1726
5LKS|1|L5|U|1727
5LKS|1|L5|U|1728
*
5LKS|1|L5|A|1801
5LKS|1|L5|A|1802
5LKS|1|L5|G|1803
5LKS|1|L5|A|1804
5LKS|1|L5|A|1805
5LKS|1|L5|G|1806
5LKS|1|L5|C|1807
5LKS|1|L5|C|1808
5LKS|1|L5|C|1809
*
5LKS|1|L5|G|1829
5LKS|1|L5|G|1830
5LKS|1|L5|G|1831
5LKS|1|L5|C|1832
5LKS|1|L5|G|1833
5LKS|1|L5|U|1834
5LKS|1|L5|G|1835
5LKS|1|L5|G|1836
5LKS|1|L5|A|1837

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

Ribosomal protein L29, isoform CRA_a