J3_5LKS_030

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUGAAGAG*UUUUUCACUGAC*GGACAG

Length

28 nucleotides

Bulged bases

5LKS|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|3937
5LKS|1|L5|G|3938
5LKS|1|L5|G|3939
5LKS|1|L5|U|3940
5LKS|1|L5|G|3941
5LKS|1|L5|A|3942
5LKS|1|L5|A|3943
5LKS|1|L5|G|3944
5LKS|1|L5|A|3945
5LKS|1|L5|G|3946
*
5LKS|1|L5|U|4067
5LKS|1|L5|U|4068
5LKS|1|L5|U|4069
5LKS|1|L5|U|4070
5LKS|1|L5|U|4071
5LKS|1|L5|C|4072
5LKS|1|L5|A|4073
5LKS|1|L5|C|4074
5LKS|1|L5|U|4075
5LKS|1|L5|G|4076
5LKS|1|L5|A|4077
5LKS|1|L5|C|4078
*
5LKS|1|L5|G|4168
5LKS|1|L5|G|4169
5LKS|1|L5|A|4170
5LKS|1|L5|C|4171
5LKS|1|L5|A|4172
5LKS|1|L5|G|4173

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a