J3_5LKS_041
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCGGCCCGGACACGG*CCGUGGGUGGUGG*CCCUUAGAUGUCCGG
- Length
- 43 nucleotides
- Bulged bases
- 5LKS|1|S2|C|1272, 5LKS|1|S2|C|1273, 5LKS|1|S2|G|1274, 5LKS|1|S2|C|1317, 5LKS|1|S2|U|1326, 5LKS|1|S2|G|1507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|S2|C|1267
5LKS|1|S2|C|1268
5LKS|1|S2|G|1269
5LKS|1|S2|G|1270
5LKS|1|S2|C|1271
5LKS|1|S2|C|1272
5LKS|1|S2|C|1273
5LKS|1|S2|G|1274
5LKS|1|S2|G|1275
5LKS|1|S2|A|1276
5LKS|1|S2|C|1277
5LKS|1|S2|A|1278
5LKS|1|S2|C|1279
5LKS|1|S2|G|1280
5LKS|1|S2|G|1281
*
5LKS|1|S2|C|1316
5LKS|1|S2|C|1317
5LKS|1|S2|G|1318
5LKS|1|S2|U|1319
5LKS|1|S2|G|1320
5LKS|1|S2|G|1321
5LKS|1|S2|G|1322
5LKS|1|S2|U|1323
5LKS|1|S2|G|1324
5LKS|1|S2|G|1325
5LKS|1|S2|U|1326
5LKS|1|S2|G|1327
5LKS|1|S2|G|1328
*
5LKS|1|S2|C|1501
5LKS|1|S2|C|1502
5LKS|1|S2|C|1503
5LKS|1|S2|U|1504
5LKS|1|S2|U|1505
5LKS|1|S2|A|1506
5LKS|1|S2|G|1507
5LKS|1|S2|A|1508
5LKS|1|S2|U|1509
5LKS|1|S2|G|1510
5LKS|1|S2|U|1511
5LKS|1|S2|C|1512
5LKS|1|S2|C|1513
5LKS|1|S2|G|1514
5LKS|1|S2|G|1515
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SM
- 40S ribosomal protein S12
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
Coloring options: