J3_5LKS_045

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

5LKS|1|L5|A|1534, 5LKS|1|L5|G|1641, 5LKS|1|L5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|1530
5LKS|1|L5|U|1531
5LKS|1|L5|G|1532
5LKS|1|L5|A|1533
5LKS|1|L5|A|1534
5LKS|1|L5|C|1535
5LKS|1|L5|U|1536
5LKS|1|L5|A|1537
*
5LKS|1|L5|U|1622
5LKS|1|L5|A|1623
5LKS|1|L5|G|1624
*
5LKS|1|L5|C|1640
5LKS|1|L5|G|1641
5LKS|1|L5|A|1642
5LKS|1|L5|A|1643
5LKS|1|L5|C|1644

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LC

60S ribosomal protein L4

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37