J3_5LKS_054
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCGACUGGCGAUGC*GGGCAGCUUCCG*CAAAGUCUUUGGG
- Length
- 39 nucleotides
- Bulged bases
- 5LKS|1|S2|C|1138, 5LKS|1|S2|A|1150, 5LKS|1|S2|C|1153, 5LKS|1|S2|U|1154, 5LKS|1|S2|U|1155, 5LKS|1|S2|U|1156, 5LKS|1|S2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|S2|C|1090
5LKS|1|S2|C|1091
5LKS|1|S2|G|1092
5LKS|1|S2|A|1093
5LKS|1|S2|C|1094
5LKS|1|S2|U|1095
5LKS|1|S2|G|1096
5LKS|1|S2|G|1097
5LKS|1|S2|C|1098
5LKS|1|S2|G|1099
5LKS|1|S2|A|1100
5LKS|1|S2|U|1101
5LKS|1|S2|G|1102
5LKS|1|S2|C|1103
*
5LKS|1|S2|G|1129
5LKS|1|S2|G|1130
5LKS|1|S2|G|1131
5LKS|1|S2|C|1132
5LKS|1|S2|A|1133
5LKS|1|S2|G|1134
5LKS|1|S2|C|1135
5LKS|1|S2|U|1136
5LKS|1|S2|U|1137
5LKS|1|S2|C|1138
5LKS|1|S2|C|1139
5LKS|1|S2|G|1140
*
5LKS|1|S2|C|1147
5LKS|1|S2|A|1148
5LKS|1|S2|A|1149
5LKS|1|S2|A|1150
5LKS|1|S2|G|1151
5LKS|1|S2|U|1152
5LKS|1|S2|C|1153
5LKS|1|S2|U|1154
5LKS|1|S2|U|1155
5LKS|1|S2|U|1156
5LKS|1|S2|G|1157
5LKS|1|S2|G|1158
5LKS|1|S2|G|1159
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SB
- 40S ribosomal protein S3a
- Chain SC
- 40S ribosomal protein S2
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SR
- 40S ribosomal protein S17
- Chain SV
- 40S ribosomal protein S21
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- 40S ribosomal protein S27
Coloring options: