J3_5LL6_001

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LL6_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1651

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

5LL6|1|2|A|41
5LL6|1|2|G|42
*
5LL6|1|2|C|433
5LL6|1|2|G|434
5LL6|1|2|C|435
5LL6|1|2|A|436
5LL6|1|2|A|437
5LL6|1|2|A|438
5LL6|1|2|U|439
*
5LL6|1|2|A|464
5LL6|1|2|G|465
5LL6|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain h

Translation initiation factor RLI1