J3_5LMO_016
3D structure
- PDB id
- 5LMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 5LMO|1|A|A|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LMO_016 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1231
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LMO|1|A|C|1116
5LMO|1|A|G|1117
5LMO|1|A|C|1118
*
5LMO|1|A|G|1155
5LMO|1|A|G|1156
5LMO|1|A|A|1157
5LMO|1|A|C|1158
5LMO|1|A|U|1159
5LMO|1|A|G|1160
5LMO|1|A|C|1161
*
5LMO|1|A|G|1175
5LMO|1|A|A|1176
5LMO|1|A|G|1177
5LMO|1|A|G|1178
5LMO|1|A|A|1179
5LMO|1|A|A|1180
5LMO|1|A|G|1181
5LMO|1|A|G|1182
5LMO|1|A|A|1183
5LMO|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
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