J3_5LMP_003
3D structure
- PDB id
- 5LMP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.35 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5LMP|1|A|U|723
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LMP_003 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1617
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5LMP|1|A|U|672
5LMP|1|A|G|673
*
5LMP|1|A|C|717
5LMP|1|A|G|718
5LMP|1|A|C|719
5LMP|1|A|C|720
5LMP|1|A|G|721
5LMP|1|A|A|722
5LMP|1|A|U|723
5LMP|1|A|G|724
5LMP|1|A|G|725
*
5LMP|1|A|C|732
5LMP|1|A|A|733
5LMP|1|A|G|734
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
- Chain Y
- mRNA
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